Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009328: Geobacillus thermodenitrificans NG80-2 chromosome, complete genome

NCBI: NC_009328

Host Lineage: Geobacillus thermodenitrificans; Geobacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Geobacillus thermodenitrificans NG80-2 was isolated from oil reservoir formation water taken at a depth of 2000 m and a temperature of 73 degrees C. This strain can use crude oil as a sole carbon source and can degrade 16 to 36 carbon alkanes. Geobacillus thermodenitrificans NG80-2 produces an emulsifier which may be useful for high temperature biodegradation or other industrial purposes. Members of this genus were originally classified as Bacillus. Recent rDNA analysis and DNA-DNA hybridization studies using spore-forming thermophilic subsurface isolates provided enough evidence to define the phylogenetically distinct, physiologically and morphologically consistent taxon Geobacillus. Geobacillus species are chemo-organotrophic, obligately thermophilic, motile, spore-forming, aerobic or facultatively anaerobic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1293000*36448371484Island text1.7905340.730248.2118Neighbours31BLASTN+IslandViewer 293000.gbk
2448224*50616957946Island text1.9232538.36850.894Neighbours31BLASTN+IslandViewer 448224.gbk
3814530*86675652227Island text1.694134.11436.2937Neighbours370BLASTN+IslandViewer 814530.gbk
41651812*168206630255Island text2.083638.965245.9538Neighbours21BLASTN+IslandViewer 1651812.gbk
51867971188650518535Island text1.78334.787848.2702Neighbours31BLASTN+1867971.gbk
61903291193109927809Island text2.1126134.684224.815Neighbours31BLASTN+IslandViewer 1903291.gbk
72083386*213609952714Island text2.8262839.907525.5854Neighbours31BLASTN+IslandViewer 2083386.gbk
82161116220809946984Island text1.9342539.099545.2557Neighbours21BLASTN+IslandViewer 2161116.gbk
92378345240985531511Island text3.1222139.823418.7215Neighbours319BLASTN+IslandViewer 2378345.gbk
102808897*283251823622Island text1.9008733.129124.578Neighbours31BLASTNIslandViewer 2808897.gbk
112905000293047925480Island text1.6966633.241521.1726Neighbours31BLASTNIslandViewer 2905000.gbk
123241166327050929344Island text1.5369431.614832.5009Neighbours31BLASTN+IslandViewer 3241166.gbk
133322802337059947798Island text1.7030533.782839.6661Neighbours312BLASTN+IslandViewer 3322802.gbk
143504454*354770543252Island text2.0070337.303924.0258Neighbours31BLASTN+IslandViewer 3504454.gbk