Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009257: Francisella tularensis subsp. tularensis WY96-3418 chromosome,

NCBI: NC_009257

Host Lineage: Francisella tularensis; Francisella; Francisellaceae; Thiotrichales; Proteobacteria; Bacteria

General Information: This strain was isolated from a human finger wound. Causative agent of tularemia. This organism was first identified by Edward Francis as the causative agent of a plague-like illness that affected squirrels in Tulare county in California in the early part of the 20th century. The organism now bears his name. The disease, which has been noted throughout recorded history, can be transmitted to humans by infected ticks or deerflies, infected meat, or by aerosol, and thus is a potential bioterrorism agent. This organism has a high infectivity rate, and can invade phagocytic and nonphagocytic cells, multiplying rapidly. Once within a macrophage, the organism can escape the phagosome and live in the cytosol. It is an aquatic organism, and can be found living inside protozoans, similar to what is observed with Legionella.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
156152811622502Island text1.4542816.257323.8031Neighbours21BLASTNIslandViewer 5615.gbk
2782919710618816Island text3.4672221.028338.0288Neighbours21BLASTN78291.gbk
3109528*15107641549Island text1.7120214.953222.7981Neighbours314BLASTN+109528.gbk
415173717911327377Island text2.0061317.601131.041Neighbours21BLASTN+151737.gbk
5226417*25948933073Island text1.8587117.359329.6301Neighbours21BLASTN226417.gbk
633899436152622533Island text1.7534718.229731.5495Neighbours21BLASTN338994.gbk
738628340687820596Island text1.6769614.956223.6387Neighbours21BLASTN386283.gbk
8503371*52367520305Island text1.5781217.925229.7032Neighbours21BLASTN503371.gbk
9775538*80022424687Island text1.5375917.217922.8073Neighbours21BLASTN775538.gbk
10963536*98653222997Island text3.2088120.431335.8885Neighbours21BLASTN+963536.gbk
111023696*104309919404Island text3.8621120.358436.6237Neighbours21BLASTN+1023696.gbk
121636633*167183635204Island text1.8394815.284526.8425Neighbours21BLASTNIslandViewer 1636633.gbk