Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009256: Burkholderia vietnamiensis G4 chromosome 1, complete sequence

NCBI: NC_009256

Host Lineage: Burkholderia vietnamiensis; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: B. vietnamiensis strain G4 (formerly B.cepacia strain R1808) is the best trichloroethene (TCE) co-oxidizing strain yet discovered, having been isolated from an industrial waste treatment facility at Pensacola Naval Air Station, Florida, U.S.A. Burkholderia vietnamiensis is a member of the Burkholderia cepacia complex which contains a number of closely related Burkholderia species. Burkholderia vietnamiensis is commonly isolated from soil and water and has been studied as a plant growth promoting bacterium and as a bioremediation agent for aromatic hydrocarbons such as benzene and tolulene.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1176403*20231825916Island text1.7139820.869522.9748Neighbours11BLASTN+IslandViewer 176403.gbk
2277020*30395526936Island text2.3725125.550328.4718Neighbours11BLASTN+IslandViewer 277020.gbk
345864948109922451Island text1.7391821.151511.9016Neighbours11BLASTN+IslandViewer 458649.gbk
41253384127652423141Island text3.6726930.928640.0414Neighbours11BLASTN+IslandViewer 1253384.gbk
51282793131270929917Island text1.7229120.398521.6815Neighbours11BLASTN+IslandViewer 1282793.gbk
61365500*138350718008Island text3.0896828.66537.2496Neighbours11BLASTN+IslandViewer 1365500.gbk
71782000180639424395Island text1.5150721.054220.642Neighbours11BLASTN+IslandViewer 1782000.gbk
82193647221794924303Island text2.2341326.287429.1433Neighbours11BLASTN+IslandViewer 2193647.gbk
92509806253471124906Island text1.5066121.789922.6641Neighbours11BLASTN+IslandViewer 2509806.gbk
102725836274712321288Island text1.636520.509319.4466Neighbours11BLASTN+IslandViewer 2725836.gbk
112907998292785419857Island text1.470724.191424.8203Neighbours11BLASTN+IslandViewer 2907998.gbk
122945059299324348185Island text2.8860933.191921.5469BLASTN+IslandViewer 2945059.gbk
133056000307809922100Island text3.7278229.038436.732Neighbours11BLASTN+3056000.gbk
143540531357686136331Island text1.8611620.41725.0755Neighbours11BLASTN+IslandViewer 3540531.gbk
153601080*362450823429Island text2.1744622.223614.2587Neighbours11BLASTNIslandViewer 3601080.gbk