Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009255: Burkholderia vietnamiensis G4 chromosome 2, complete sequence

NCBI: NC_009255

Host Lineage: Burkholderia vietnamiensis; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: B. vietnamiensis strain G4 (formerly B.cepacia strain R1808) is the best trichloroethene (TCE) co-oxidizing strain yet discovered, having been isolated from an industrial waste treatment facility at Pensacola Naval Air Station, Florida, U.S.A. Burkholderia vietnamiensis is a member of the Burkholderia cepacia complex which contains a number of closely related Burkholderia species. Burkholderia vietnamiensis is commonly isolated from soil and water and has been studied as a plant growth promoting bacterium and as a bioremediation agent for aromatic hydrocarbons such as benzene and tolulene.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
121324523619822954Island text1.557221.674419.6248Neighbours11BLASTN+IslandViewer 213245.gbk
235169537125519561Island text3.034225.844530.476Neighbours11BLASTN+IslandViewer 351695.gbk
376315779080127645Island text1.5934121.727617.3742Neighbours11BLASTN+IslandViewer 763157.gbk
491600093901723018Island text2.0240526.287233.2156Neighbours11BLASTN+IslandViewer 916000.gbk
51071868*110272530858Island text1.4874519.710620.6603Neighbours11BLASTN+IslandViewer 1071868.gbk
61105786117009964314Island text1.4921419.617115.3371Neighbours11BLASTN+IslandViewer 1105786.gbk
71250939*130327152333Island text1.9013520.608422.084Neighbours11BLASTN+IslandViewer 1250939.gbk
81344000136699122992Island text1.977323.592122.1771Neighbours11BLASTN+IslandViewer 1344000.gbk
91369200139259923400Island text1.4665823.370628.5906Neighbours11BLASTN+IslandViewer 1369200.gbk
101890112191759927488Island text1.5536319.933322.2557Neighbours11BLASTN+IslandViewer 1890112.gbk
112044291207009925809Island text2.5378325.611518.9779Neighbours11BLASTNIslandViewer 2044291.gbk