Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009254: Burkholderia vietnamiensis G4 chromosome 3, complete sequence

NCBI: NC_009254

Host Lineage: Burkholderia vietnamiensis; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: B. vietnamiensis strain G4 (formerly B.cepacia strain R1808) is the best trichloroethene (TCE) co-oxidizing strain yet discovered, having been isolated from an industrial waste treatment facility at Pensacola Naval Air Station, Florida, U.S.A. Burkholderia vietnamiensis is a member of the Burkholderia cepacia complex which contains a number of closely related Burkholderia species. Burkholderia vietnamiensis is commonly isolated from soil and water and has been studied as a plant growth promoting bacterium and as a bioremediation agent for aromatic hydrocarbons such as benzene and tolulene.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1230004109918100Island text1.8656719.309318.7538Neighbours11BLASTN+IslandViewer 23000.gbk
2740009666322664Island text3.6994926.167835.7519Neighbours11BLASTN+IslandViewer 74000.gbk
332970035260722908Island text1.9345420.750922.9527Neighbours11BLASTN+IslandViewer 329700.gbk
436581240690441093Island text2.0030421.46322.4915Neighbours11BLASTN+IslandViewer 365812.gbk
544236046571723358Island text1.7013621.401426.9371Neighbours11BLASTN+IslandViewer 442360.gbk
663795269736459413Island text2.041921.443814.0912Neighbours11BLASTN+IslandViewer 637952.gbk
770089172859927709Island text1.8996621.001921.4336Neighbours11BLASTN+IslandViewer 700891.gbk
874570678379938094Island text2.0746520.26119.0623Neighbours11BLASTN+IslandViewer 745706.gbk
980525582406718813Island text1.9160719.974318.3241Neighbours11BLASTN+IslandViewer 805255.gbk
101116174114642830255Island text1.5344819.975318.4464Neighbours11BLASTN+IslandViewer 1116174.gbk