Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009253: Desulfotomaculum reducens MI-1 chromosome, complete genome

NCBI: NC_009253

Host Lineage: Desulfotomaculum reducens; Desulfotomaculum; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Uranium- and chromium-reducing sediment bacterium. Desulfotomaculum reducens is able to reduce uranium and chromium making it a potential agent for the bioremediation of heavy metals. This organism was isolated from heavy metal-contaminated marine sediment collected at the Mare Island Naval Shipyard on the San Francisco Bay, USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113901415955320540Island text2.2913535.515252.5931BLASTN139014.gbk
238983541602626192Island text1.5383238.075153.6472Neighbours21BLASTN+IslandViewer 389835.gbk
3529494*55297223479Island text1.8280831.253950.8542Neighbours22BLASTN+IslandViewer 529494.gbk
482991385443624524Island text4.6738533.192724.9159Neighbours21BLASTN+829913.gbk
5897684*95471757034Island text2.2439133.909954.1722Neighbours21BLASTN+IslandViewer 897684.gbk
61031799*105140419606Island text1.5159931.152728.1459Neighbours22BLASTN1031799.gbk
71265474129003124558Island text1.702729.094728.1764Neighbours337BLASTN+IslandViewer 1265474.gbk
81381401140485723457Island text1.908928.179830.6416Neighbours22BLASTN+1381401.gbk
92139379*216047421096Island text2.1466128.182843.4401Neighbours22BLASTN2139379.gbk
102315958*234187925922Island text1.5545633.4648.2901Neighbours21BLASTN+IslandViewer 2315958.gbk
112577316*260138724072Island text2.0184132.90346.2042Neighbours22BLASTN2577316.gbk
122615777263816322387Island text1.5386229.170741.6433Neighbours22BLASTN2615777.gbk
132819000283709918100Island text1.5848127.933548.5808Neighbours21+2819000.gbk
142927802295009922298Island text2.0567834.214546.2032Neighbours22BLASTN+2927802.gbk
153017280*304366626387Island text4.0442731.851621.9877Neighbours22BLASTN+3017280.gbk
163272000330398631987Island text1.6594230.391435.5951Neighbours21BLASTN+IslandViewer 3272000.gbk
173317533334096323431Island text1.5938128.030843.8056BLASTN+3317533.gbk