Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009142: Saccharopolyspora erythraea NRRL 2338, complete genome

NCBI: NC_009142

Host Lineage: Saccharopolyspora erythraea; Saccharopolyspora; Pseudonocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Source of the antibiotic erythromycin. Saccharopolyspora erythraea is the soil bacterium that produces the industrially important antibiotic erythromycin A. Erythromycin is a clinically important and potent macrolide antibiotic. It is used to treat infections caused by several prokaryotic pathogens such as Streptococcus, Staphylococcus, Mycoplasma, Ureaplasma, Chlamydia and Legionella. Production of this antibiotic is lower than others in the same class, such as penicillin or cephalosporin, which has led to the development of a genetic system to attempt to enhance the production of erythromycin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1267550*29023122682Island text1.8753612.19318.0534Neighbours11BLASTN+IslandViewer 267550.gbk
2515828*53593820111Island text1.7692212.675118.8558Neighbours11BLASTN+IslandViewer 515828.gbk
3827912*84912621215Island text1.9917112.241613.9237Neighbours11BLASTN+IslandViewer 827912.gbk
4949510*97814228633Island text1.8594311.703612.0173Neighbours11BLASTN+IslandViewer 949510.gbk
51242850*126110818259Island text1.4815312.907321.6226Neighbours11BLASTN+IslandViewer 1242850.gbk
61282589130645923871Island text1.4319412.822212.2427Neighbours11BLASTN1282589.gbk
71701000172876327764Island text1.7672514.558912.774Neighbours11BLASTN1701000.gbk
82480608*252218941582Island text1.6642211.66219.16518Neighbours11BLASTN+IslandViewer 2480608.gbk
92565561258937023810Island text1.4983412.515.8972Neighbours11BLASTN+2565561.gbk
102692693271625123559Island text1.8685213.662318.3653Neighbours11BLASTN+2692693.gbk
112725000275437129372Island text1.6935114.328818.3367Neighbours11BLASTN+IslandViewer 2725000.gbk
122801517283231830802Island text1.4832712.123110.19Neighbours11BLASTN+IslandViewer 2801517.gbk
132822260*285087528616Island text1.5955711.84958.83786Neighbours11BLASTN+IslandViewer 2822260.gbk
142963831298735823528Island text1.6755812.591921.0356Neighbours11BLASTN+2963831.gbk
153943829396903925211Island text1.7205216.961329.9501Neighbours11BLASTN3943829.gbk
164046376406758021205Island text1.5776114.304624.8403Neighbours11BLASTN+IslandViewer 4046376.gbk
174571889461144339555Island text1.4109414.190226.7694Neighbours11BLASTN4571889.gbk
185425763544844722685Island text1.3847715.035319.9293Neighbours11BLASTN+IslandViewer 5425763.gbk
195459819548206622248Island text1.5374511.696615.7936Neighbours11BLASTN+5459819.gbk
205484883550966924787Island text1.7342812.404510.653Neighbours11BLASTN+5484883.gbk
215519208554891729710Island text1.9661411.982713.3879Neighbours11BLASTN+IslandViewer 5519208.gbk
225579563561009730535Island text1.8237513.13677.59701Neighbours11BLASTN5579563.gbk
235647737*567459926863Island text1.5909210.539315.7084Neighbours11BLASTN+IslandViewer 5647737.gbk
245698100*573806239963Island text2.0106314.733518.5599Neighbours11BLASTN+IslandViewer 5698100.gbk
256086000610482618827Island text1.5253212.083514.7156Neighbours11BLASTN+6086000.gbk
266109622614475935138Island text1.7019214.003323.4984Neighbours11BLASTNIslandViewer 6109622.gbk
276199326*625640657081Island text1.9778317.29725.6604Neighbours11BLASTN+IslandViewer 6199326.gbk
286729512675813128620Island text2.8562617.11124.3038Neighbours11BLASTN+6729512.gbk
297820251783911518865Island text1.6747311.688414.7643Neighbours11BLASTN+7820251.gbk