Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009135: Methanococcus maripaludis C5, complete genome

NCBI: NC_009135

Host Lineage: Methanococcus maripaludis; Methanococcus; Methanococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Anaerobic methane-producing archaeon. Methanococcus maripaludis is an obligately anaerobic, mesophilic, methane-producing archaeon. Growth on hydrogen and carbon dioxide results in the production of methane as a waste product. M. maripaludis stands out among methanogenic archaea as an ideal model species because of fast reproducible growth and effective genetic tools.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111806518065Island text1.86329.819936.3911Neighbours21BLASTN1.gbk
2130159*15228022122Island text1.7333921.264329.1117Neighbours21BLASTN130159.gbk
3168500*18737018871Island text1.5127920.519231.8005Neighbours21BLASTN+168500.gbk
4330628*37338442757Island text1.4514421.790331.1606Neighbours21BLASTN+330628.gbk
5494949*51848723539Island text1.6521825.260931.3553Neighbours21BLASTN+494949.gbk
662031264047520164Island text1.5346524.090625.6337Neighbours21BLASTN620312.gbk
71654131*167943325303Island text2.1301324.83129.4218Neighbours21BLASTN+1654131.gbk