Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009091: Prochlorococcus marinus str. MIT 9301, complete genome

NCBI: NC_009091

Host Lineage: Prochlorococcus marinus; Prochlorococcus; Prochlorococcaceae; Prochlorales; Cyanobacteria; Bacteria

General Information: This strain was isolated from the Sargasso Sea at a depth of 90 m (34o 45.5'N; 66o 11.1'W). This strain belongs to the 'high light-adapted' ecotype, clade II, and has a low Chl b/a2 ratio. Marine cyanobacterium. This non-motile bacterium is a free-living marine organism that is one of the most abundant, as well as the smallest, on earth, and contributes heavily to carbon cycling in the marine environment. This cyanobacterium grows in areas of nitrogen and phosphorus limitation and is unique in that it utilizes divinyl chlorophyll a/b proteins as light-harvesting systems instead of phycobiliproteins. These pigments allow harvesting of light energy from blue wavelengths at low light intensity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
149330251538122080Island text1.51718.053914.1826Neighbours21BLASTN+493302.gbk
21392469*141964027172Island text1.8224618.598628.1757Neighbours21BLASTN1392469.gbk
31423677*146966745991Island text1.5433118.254620.9964Neighbours21BLASTN1423677.gbk
41514770*153924424475Island text1.4253818.798612.2427Neighbours21BLASTN1514770.gbk
51598044*161934121298Island text1.7911416.347530.2851Neighbours21BLASTN+1598044.gbk