Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009078: Burkholderia pseudomallei 1106a chromosome II, complete sequence

NCBI: NC_009078

Host Lineage: Burkholderia pseudomallei; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from liver abscess from a 23-year old female patient in Thailand in 1993. This species is an opportunistic pathogen and can cause pneumonia, bacteremia, and melioidosis. It is normally found in terrestrial environments and has been recovered from rice paddies and moist tropical soil. It is endemic in Asia and Australia, but can be found in other parts of the world. The organism can exist intracellularly and can spread through the bloodstream (bacteremia)

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17495410871533762Island text2.3245622.720120.4743Neighbours11BLASTN+IslandViewer 74954.gbk
2142794*17264129848Island text2.149724.607630.2676Neighbours11BLASTN+IslandViewer 142794.gbk
3510525*54399133467Island text1.6952318.002219.7588Neighbours11BLASTN+IslandViewer 510525.gbk
486279689418031385Island text3.1858333.037225.8529Neighbours11BLASTN+IslandViewer 862796.gbk
51578500160125422755Island text1.6877123.755517.1416Neighbours11BLASTN+IslandViewer 1578500.gbk
61841023186009919077Island text1.5370727.561628.3977Neighbours11BLASTNIslandViewer 1841023.gbk
72351046*237054119496Island text1.4845221.692617.8097Neighbours11BLASTN2351046.gbk
82718741276343044690Island text1.7232823.268124.6866Neighbours11BLASTN+IslandViewer 2718741.gbk
93087759*311399926241Island text1.4301923.024129.7357Neighbours11BLASTN+3087759.gbk