Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009077: Mycobacterium sp. JLS, complete genome

NCBI: NC_009077

Host Lineage: Mycobacterium; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism was isolated from creosote-contaminated soil from the Champion International Superfund site in Libby, Montana, USA. This microbe, along with some others collected at this site, is able to rapidly mineralize 14C-labeled pyrene. Phylogenetic studies based on the rRNA 16S gene confirmed that strains collected at this site were distinct from one another and also from other known Mycobacterium isolates.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
187416490865534492Island text1.5751619.391312.6387Neighbours11BLASTN+IslandViewer 874164.gbk
21027357*106455537199Island text3.5953725.798529.6018Neighbours11BLASTNIslandViewer 1027357.gbk
31687304172055433251Island text1.9360316.882117.6478Neighbours11BLASTN+1687304.gbk
41725683177988554203Island text2.0290418.957821.8061Neighbours11BLASTN+IslandViewer 1725683.gbk
52308634*235649847865Island text1.7054416.010517.9894Neighbours11BLASTN+IslandViewer 2308634.gbk
63323291335489131601Island text1.520914.85610.3449Neighbours11BLASTN+IslandViewer 3323291.gbk
73376351339892622576Island text1.742517.357117.8063Neighbours11BLASTNIslandViewer 3376351.gbk
83851203*387313021928Island text1.5468316.304615.458Neighbours11BLASTN+IslandViewer 3851203.gbk
94419084444609827015Island text1.6757717.144316.3615Neighbours11BLASTNIslandViewer 4419084.gbk
104671417*469950728091Island text1.8883218.839515.186Neighbours11BLASTN+IslandViewer 4671417.gbk
114747922477085022929Island text1.5466217.44715.5149Neighbours11BLASTNIslandViewer 4747922.gbk
124774499480744932951Island text1.5296615.508220.2477Neighbours11BLASTN+IslandViewer 4774499.gbk
134810379483961029232Island text1.9956819.100227.8292Neighbours11BLASTN+IslandViewer 4810379.gbk
145286275531059924325Island text2.1489418.920222.9186Neighbours11BLASTNIslandViewer 5286275.gbk