Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009075: Burkholderia pseudomallei 668 chromosome II, complete sequence

NCBI: NC_009075

Host Lineage: Burkholderia pseudomallei; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from the blood of a 53 year old male patient with severe melioidosis encephalomyelitis in Darwin, Australia in 1995. This species is an opportunistic pathogen and can cause pneumonia, bacteremia, and melioidosis. It is normally found in terrestrial environments and has been recovered from rice paddies and moist tropical soil. It is endemic in Asia and Australia, but can be found in other parts of the world. The organism can exist intracellularly and can spread through the bloodstream (bacteremia).

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1150174611331097Island text2.769526.399717.2248Neighbours11BLASTN+IslandViewer 15017.gbk
29221012709934890Island text2.6614226.275519.9848Neighbours11BLASTN+IslandViewer 92210.gbk
3587441*62177434334Island text2.1547422.987617.4065Neighbours11BLASTN+IslandViewer 587441.gbk
493778296831430533Island text3.1052732.639925.3069Neighbours11BLASTN+IslandViewer 937782.gbk
51638789165909920311Island text1.525417.277517.0605Neighbours11BLASTN+IslandViewer 1638789.gbk
61906915192867121757Island text1.5306728.605326.7166Neighbours11BLASTN+IslandViewer 1906915.gbk
72428248*244904320796Island text1.5627921.738223.7575Neighbours11BLASTN2428248.gbk
83113393*313999926607Island text1.4884122.160725.8801Neighbours11BLASTN+3113393.gbk