Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009074: Burkholderia pseudomallei 668 chromosome I, complete sequence

NCBI: NC_009074

Host Lineage: Burkholderia pseudomallei; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from the blood of a 53 year old male patient with severe melioidosis encephalomyelitis in Darwin, Australia in 1995. This species is an opportunistic pathogen and can cause pneumonia, bacteremia, and melioidosis. It is normally found in terrestrial environments and has been recovered from rice paddies and moist tropical soil. It is endemic in Asia and Australia, but can be found in other parts of the world. The organism can exist intracellularly and can spread through the bloodstream (bacteremia).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
194000*11859924600Island text2.3678623.767818.1577Neighbours11BLASTNIslandViewer 94000.gbk
21092000111222420225Island text1.594923.32627.6546Neighbours11BLASTN1092000.gbk
31470689150586435176Island text2.6693226.181724.776Neighbours11BLASTN+IslandViewer 1470689.gbk
41555500157861623117Island text1.8553128.572733.8116Neighbours11BLASTN+IslandViewer 1555500.gbk
52117500214668929190Island text2.0293624.669718.1437Neighbours11BLASTN+IslandViewer 2117500.gbk
62914053*293925825206Island text2.2104622.634524.8244Neighbours11BLASTN+IslandViewer 2914053.gbk
72970435*301145841024Island text3.4391532.228330.9871Neighbours11BLASTN+IslandViewer 2970435.gbk
83029716304855618841Island text1.514717.880631.3223Neighbours11BLASTN+IslandViewer 3029716.gbk
93163362*320181038449Island text2.1153326.269434.2824Neighbours11BLASTN+IslandViewer 3163362.gbk
103409849*344201632168Island text2.238226.705717.6383Neighbours11BLASTN+IslandViewer 3409849.gbk
113559211*358478825578Island text2.4884327.056917.1991Neighbours11BLASTN+IslandViewer 3559211.gbk
123791232*381784126610Island text2.4736728.303232.874Neighbours11BLASTN+IslandViewer 3791232.gbk