Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009073: Pyrobaculum calidifontis JCM 11548, complete genome

NCBI: NC_009073

Host Lineage: Pyrobaculum calidifontis; Pyrobaculum; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: This organism is a facultatively anaerobic, hyperthermophilic archaeon, first isolated from a hot spring in the Philippines. Pyrobaculum calidifontis cannot use sulfur compounds for anaerobic growth and is only able to grow anaerobically using nitrate as an electron acceptor.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2039520395Island text1.8091433.955539.7491Neighbours63BLASTN1.gbk
2455381*48107225692Island text2.9109245.619735.048Neighbours63BLASTN455381.gbk
3529148*57959950452Island text2.0027837.825535.3483Neighbours63BLASTN529148.gbk
469666372148124819Island text1.87837.103930.9538Neighbours61BLASTN696663.gbk
580337282630022929Island text1.6417236.977124.1099Neighbours63BLASTN+803372.gbk
61195325122278827464Island text1.7509637.694640.6947Neighbours61BLASTN1195325.gbk
71614320*163373819419Island text1.5667430.415924.9756Neighbours63BLASTN+1614320.gbk
81708544*173299124448Island text3.2254628.605352.0953Neighbours61BLASTN1708544.gbk
91934715*195739722683Island text1.9701830.43751.7183Neighbours63BLASTN+1934715.gbk