Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009053: Actinobacillus pleuropneumoniae L20, complete genome

NCBI: NC_009053

Host Lineage: Actinobacillus pleuropneumoniae; Actinobacillus; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: This organism is an obligate parasite of pigs. The bacterium colonizes and invades the porcine lower respiratory tract and can survive phagocytosis by macrophages, eventually resulting in the death of the macrophage cell. Three RTS toxins, which result in cell damage, are produced by this organism.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131377933687823100Island text1.4474524.507525.3259Neighbours21BLASTN+313779.gbk
2393700*41964225943Island text1.5141523.40115.6109Neighbours35BLASTN393700.gbk
3553298*58152528228Island text1.6893327.726819.3161Neighbours21BLASTN+IslandViewer 553298.gbk
489596592080824844Island text1.8085528.583216.8726Neighbours21BLASTN+IslandViewer 895965.gbk
51081651111181130161Island text1.8946530.617214.1455Neighbours21BLASTN+IslandViewer 1081651.gbk
61257302128078923488Island text1.5891824.896620.1852Neighbours35BLASTN1257302.gbk
71668500*169468326184Island text2.3311427.084222.2548Neighbours21BLASTN+1668500.gbk
81785447*180792922483Island text1.5120829.513921.6611Neighbours21BLASTN+IslandViewer 1785447.gbk
91895485191855623072Island text1.4123624.367716.2565Neighbours35BLASTN+1895485.gbk
101942973*197934536373Island text1.6924326.323124.7371Neighbours35BLASTNIslandViewer 1942973.gbk
112025782*204904723266Island text1.4535528.258817.024Neighbours35BLASTNIslandViewer 2025782.gbk