Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009052: Shewanella baltica OS155, complete genome

NCBI: NC_009052

Host Lineage: Shewanella baltica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from the Baltic Sea. A psychrophilic bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems.This species is differentiated from other Shewanella spp. based on its ability to grow at 4 degrees C but not at 37, production of N-acetyl-beta-glucosaminidase, lack of chymotrypsin, and ability to use a variety of complex carbon compounds as carbon and energy sources.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1710589215921102Island text2.2819128.996129.558Neighbours42BLASTN+IslandViewer 71058.gbk
2144619*16288518267Island text2.0782227.708522.4814Neighbours42BLASTN+144619.gbk
31211989*123680124813Island text1.9636230.567432.8852Neighbours21BLASTN+IslandViewer 1211989.gbk
41394000*141634622347Island text1.8177428.526338.3542Neighbours42BLASTN1394000.gbk
51899954192338923436Island text1.8007831.588632.3522Neighbours21BLASTN+1899954.gbk
62107692213162923938Island text2.2213731.77817.5752Neighbours21BLASTN+IslandViewer 2107692.gbk
72512373255632743955Island text2.0545330.058427.0684Neighbours41BLASTN+IslandViewer 2512373.gbk
82683447*270509921653Island text1.5616328.909336.2377Neighbours21BLASTN+IslandViewer 2683447.gbk
93229775325444124667Island text2.0793927.559629.2484Neighbours42BLASTNIslandViewer 3229775.gbk
103381943341170229760Island text4.4949234.484422.3164Neighbours21BLASTN+IslandViewer 3381943.gbk
113467000348590918910Island text1.8519427.735929.4433Neighbours21BLASTNIslandViewer 3467000.gbk
124168776*418945120676Island text1.6145929.819723.3189Neighbours21BLASTN+IslandViewer 4168776.gbk
134335754435735621603Island text1.7447428.27421.582Neighbours21BLASTN+4335754.gbk
144437649*446134423696Island text1.8359627.228235.7169Neighbours21BLASTN+IslandViewer 4437649.gbk
155089963511024820286Island text1.6855229.012622.3363Neighbours21BLASTN+IslandViewer 5089963.gbk