Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009051: Methanoculleus marisnigri JR1, complete genome

NCBI: NC_009051

Host Lineage: Methanoculleus marisnigri; Methanoculleus; Methanomicrobiaceae; Methanomicrobiales; Euryarchaeota; Archaea

General Information: Methanogen present in marine and freshwater sediments. Methanoculleus marisnigri was first isolated from sediment from the Black Sea, but has also been identified in freshwater sediments. This organism can use hydrogen, formate, and secondary alcohols, such as propanol and butanol, for methanogenesis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1729809683523856Island text1.5895128.514133.1344Neighbours11BLASTN+72980.gbk
211389813650122604Island text1.6527226.386223.7361Neighbours18BLASTN113898.gbk
316510219763632535Island text4.9763148.086229.6056Neighbours38BLASTN+IslandViewer 165102.gbk
441992943959919671Island text1.5659128.424918.3863Neighbours18BLASTN419929.gbk
565700069409737098Island text4.3205845.900830.5687Neighbours38BLASTNIslandViewer 657000.gbk
693075895459523838Island text2.2587629.902530.8911Neighbours18BLASTN930758.gbk
71074993110370728715Island text2.5514337.335827.6803Neighbours38BLASTN1074993.gbk
81118486116040741922Island text2.1011132.319825.8685Neighbours18BLASTN+1118486.gbk
91242351126577723427Island text1.5001525.802525.198Neighbours11BLASTN1242351.gbk
101455183*150258047398Island text3.3858740.633634.9486Neighbours38BLASTNIslandViewer 1455183.gbk
111588060*161631728258Island text2.4089936.848626.0275Neighbours18BLASTNIslandViewer 1588060.gbk
121730104175464424541Island text3.1595834.235242.5306Neighbours18BLASTN+IslandViewer 1730104.gbk
132097271*212680329533Island text2.4206337.190320.7316Neighbours18BLASTN+2097271.gbk
142240480225877318294Island text1.8205627.330630.9599Neighbours38BLASTN+2240480.gbk
152365711239164325933Island text1.9927631.211924.2725Neighbours11BLASTN2365711.gbk