Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009050: Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequence

NCBI: NC_009050

Host Lineage: Rhodobacter sphaeroides; Rhodobacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: A photosynthetic bacterium useful in bioremediation. Anoxygenic photosynthesis, Carbon fixation, Nitrogen fixation. Bacteria belonging to the Rhodobacter group are metabolically versatile as they are able to grow using photosynthesis, chemosynthesis, and usually can grow under both anaerobic and aerobic conditions. It can grow aerobically and anaerobically in the light and anaerobically in the dark. It produces an intracytoplasmic membrane system consisting of membrane invaginations where the light harvesting complexes (LH1 and LH2) and the reaction center are synthesized.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1212270*28083968570Island text2.1079218.989818.4504Neighbours11BLASTN+IslandViewer 212270.gbk
2427000*45201225013Island text2.4861320.660815.3448Neighbours11BLASTNIslandViewer 427000.gbk
3567209*59401626808Island text4.0359124.69527.636Neighbours11BLASTN+567209.gbk
4604950*62896424015Island text4.4513924.717331.9118Neighbours11BLASTN+604950.gbk
5811358*85387342516Island text2.7720320.964518.3524Neighbours11BLASTN+IslandViewer 811358.gbk