Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009049: Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence

NCBI: NC_009049

Host Lineage: Rhodobacter sphaeroides; Rhodobacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: A photosynthetic bacterium useful in bioremediation. Anoxygenic photosynthesis, Carbon fixation, Nitrogen fixation. Bacteria belonging to the Rhodobacter group are metabolically versatile as they are able to grow using photosynthesis, chemosynthesis, and usually can grow under both anaerobic and aerobic conditions. It can grow aerobically and anaerobically in the light and anaerobically in the dark. It produces an intracytoplasmic membrane system consisting of membrane invaginations where the light harvesting complexes (LH1 and LH2) and the reaction center are synthesized.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
180184*10775527572Island text3.4595321.392924.8207Neighbours11BLASTN+IslandViewer 80184.gbk
262700064984822849Island text1.6105415.372712.3929Neighbours11BLASTN+IslandViewer 627000.gbk
31125681116136535685Island text1.5050518.002212.2975Neighbours11BLASTNIslandViewer 1125681.gbk
41934398*196979735400Island text1.74318.293719.6695Neighbours11BLASTN+IslandViewer 1934398.gbk
52131017*216459933583Island text4.205330.639427.2477Neighbours11BLASTN+IslandViewer 2131017.gbk