Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009033: Staphylothermus marinus F1, complete genome

NCBI: NC_009033

Host Lineage: Staphylothermus marinus; Staphylothermus; Desulfurococcaceae; Desulfurococcales; Crenarchaeota; Archaea

General Information: Hyperthermophilic archaeon. This organism was isolated from hydrothermal marine sediment from Vulcano Island in Italy. Staphylothermus marinus is heterotrophic and requires sulfur, which is reduced to H2S, for growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113380015588922090Island text1.7316717.42736.6726Neighbours21BLASTN+133800.gbk
2295517*31877323257Island text1.5659116.138727.4272Neighbours21+295517.gbk
3653462*67379320332Island text1.4979618.689236.0763Neighbours21BLASTN+653462.gbk
4755226*77569220467Island text1.7967918.969735.7362Neighbours21BLASTN+755226.gbk
5791515*84565354139Island text2.1370519.346437.0101Neighbours21BLASTN+791515.gbk
6996616*102084424229Island text2.9288321.037740.428Neighbours21BLASTN996616.gbk
71042500*106125618757Island text2.1872418.699836.9066Neighbours21BLASTN+1042500.gbk
81108236*113565427419Island text2.510843.292727.5766NeighboursBLASTN+1108236.gbk
91283645130229918655Island text1.4921820.209136.1615Neighbours21BLASTN+1283645.gbk