Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009009: Streptococcus sanguinis SK36, complete genome

NCBI: NC_009009

Host Lineage: Streptococcus sanguinis; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain was isolated from human dental plaque in 1980 and is virulent in a rat model. Indigenous oral bacteria that causes dental decay and possibly endocarditis. Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. This microbe is found associated with human oral bacterial communities and can colonize the dental surfaces, aiding other organisms in attachment. Progression of caries and periodontal disease are associated with this microbe as is endocarditis which can lead to death.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1219087*23832519239Island text1.7611226.377117.9803Neighbours21BLASTN+219087.gbk
2540992*56695425963Island text1.6908126.383130.9416Neighbours21BLASTNIslandViewer 540992.gbk
31295607131896323357Island text1.9866628.240524.7069Neighbours21BLASTN+1295607.gbk
41340518135991719400Island text1.9744427.109716.1408Neighbours21BLASTNIslandViewer 1340518.gbk
51792317*181459922283Island text2.3216528.320921.958Neighbours21BLASTNIslandViewer 1792317.gbk
61876367*189610219736Island text2.1747726.845225.671Neighbours21BLASTNIslandViewer 1876367.gbk
72286000*230814922150Island text1.6979228.244922.8852Neighbours21BLASTN+2286000.gbk