Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009004: Lactococcus lactis subsp. cremoris MG1363, complete genome

NCBI: NC_009004

Host Lineage: Lactococcus lactis; Lactococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Microorganism used in cheese production. This microbe is a member of the lactic acid bacteria and produces lactic acid from sugars. It is found in many environments including plant and animal habitats. Lactococcus lactis is used as a starter culture for the production of cheese products (such as cheddar) and in milk fermentations and, as such, is one of the most important microbes in the food industry. The degradation of casein, acidification by lactic acid, and production of flavor compounds, processes that are caused by the bacteria, contribute to the final product.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1259884846022473Island text1.4791218.804734.6266Neighbours21BLASTN+IslandViewer 25988.gbk
21770497*179533924843Island text1.6346225.573938.3073Neighbours21BLASTN1770497.gbk
32055563*207809922537Island text1.4812922.726233.0795Neighbours21BLASTN+IslandViewer 2055563.gbk
42207148*222756520418Island text1.6146919.985431.3887Neighbours21BLASTN+IslandViewer 2207148.gbk
52477220*250009922880Island text1.5231721.852638.5522Neighbours21BLASTN+IslandViewer 2477220.gbk