Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008942: Methanocorpusculum labreanum Z, complete genome

NCBI: NC_008942

Host Lineage: Methanocorpusculum labreanum; Methanocorpusculum; Methanocorpusculaceae; Methanomicrobiales; Euryarchaeota; Archaea

General Information: Methanocorpusculum labreanum Z was isolated from surface sediment from the LaBrea Tar Pits in Los Angeles, California, USA. Methanocorpusculum labreanum fixes carbon dioxide, produces methane and is involved in biomethanation processes (wastewater treatment, sewage, landfills).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1274364868421249Island text1.8466829.541622.0947Neighbours38BLASTNIslandViewer 27436.gbk
269835372313924787Island text2.6288436.985823.2893Neighbours38BLASTN698353.gbk
3815280*83709321814Island text1.9048832.790932.5732Neighbours38BLASTN815280.gbk
487506090754032481Island text2.5965239.179121.9298Neighbours38BLASTNIslandViewer 875060.gbk
591587193962623756Island text2.123737.478517.1646Neighbours38BLASTNIslandViewer 915871.gbk
6960306*98261122306Island text1.5273729.775717.0545Neighbours38BLASTNIslandViewer 960306.gbk
71198000123559937600Island text1.4682229.999338.4127Neighbours38BLASTNIslandViewer 1198000.gbk
81446682147602929348Island text2.8631738.767124.2721Neighbours38BLASTNIslandViewer 1446682.gbk
91706191*173083124641Island text2.0213433.449820.3313Neighbours38BLASTNIslandViewer 1706191.gbk
101768588179699928412Island text1.8591533.540323.7714Neighbours38BLASTNIslandViewer 1768588.gbk