Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008826: Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence

NCBI: NC_008826

Host Lineage: Methylibium petroleiphilum; Methylibium; ; Burkholderiales; Proteobacteria; Bacteria

General Information: Methylibium petroleiphilum strain PM1 (ATCC BAA-1232) was isolated in 1998 from the biofilter of a treatment plant in an oil refinery in Los Angeles, California, USA. Strain PM1 is capable of degrading aromatic compounds such as benzene, toluene and xylenes. Methyl tertiary-butyl ether-degrading bacterium. Methylibium petroleiphilum is a methylotroph (able to utilize reduced one-carbon compounds) able to degrade methyl tertiary-butyl ether (MTBE) under aerobic conditions. MTBE is a gasoline additive used as an oxygenate and to raise the octane number.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1133933243219040Island text1.5289619.917314.3562Neighbours11BLASTN13393.gbk
28421810609921882Island text1.6426722.168925.7164Neighbours11BLASTN84218.gbk
317060919782727219Island text1.8563520.722619.1334Neighbours11BLASTN170609.gbk
451745853745319996Island text2.3592618.073119.841Neighbours11BLASTN+517458.gbk
553983557246832634Island text2.2493920.647522.4124Neighbours11BLASTN+539835.gbk