Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008825: Methylibium petroleiphilum PM1, complete genome

NCBI: NC_008825

Host Lineage: Methylibium petroleiphilum; Methylibium; ; Burkholderiales; Proteobacteria; Bacteria

General Information: Methylibium petroleiphilum strain PM1 (ATCC BAA-1232) was isolated in 1998 from the biofilter of a treatment plant in an oil refinery in Los Angeles, California, USA. Strain PM1 is capable of degrading aromatic compounds such as benzene, toluene and xylenes. Methyl tertiary-butyl ether-degrading bacterium. Methylibium petroleiphilum is a methylotroph (able to utilize reduced one-carbon compounds) able to degrade methyl tertiary-butyl ether (MTBE) under aerobic conditions. MTBE is a gasoline additive used as an oxygenate and to raise the octane number.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1404000*42641722418Island text1.4703918.330517.8706Neighbours11BLASTN+IslandViewer 404000.gbk
2564392*59156627175Island text1.8617917.726918.6628Neighbours11BLASTNIslandViewer 564392.gbk
3747756*77216424409Island text1.6232319.807926.6719Neighbours11BLASTN+747756.gbk
484691687479727882Island text2.0008823.721417.8402Neighbours11BLASTN+IslandViewer 846916.gbk
51113060114104127982Island text1.7299817.129320.6463Neighbours11BLASTN+IslandViewer 1113060.gbk
61258500129286934370Island text1.6939217.914311.8713Neighbours11BLASTN+IslandViewer 1258500.gbk
72063990208713723148Island text2.0063517.471719.1464Neighbours11BLASTN2063990.gbk
82525380*255303327654Island text1.8523520.925816.866Neighbours11BLASTNIslandViewer 2525380.gbk
92564965258966024696Island text2.1711419.402225.28Neighbours11BLASTN+IslandViewer 2564965.gbk
102700617271935418738Island text1.4995119.582914.7034Neighbours11BLASTN+IslandViewer 2700617.gbk
112761499278395922461Island text1.7117319.394519.4346Neighbours11BLASTN+IslandViewer 2761499.gbk
122889933292316233230Island text1.8760620.374318.3474Neighbours11BLASTNIslandViewer 2889933.gbk
133161146318336522220Island text1.7722416.189911.3668Neighbours11BLASTN+IslandViewer 3161146.gbk
143298506332293624431Island text1.5453917.70616.4088Neighbours11BLASTN3298506.gbk
154025705*405199926295Island text1.3971317.290914.1308Neighbours11BLASTN+4025705.gbk