Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008819: Prochlorococcus marinus str. NATL1A, complete genome

NCBI: NC_008819

Host Lineage: Prochlorococcus marinus; Prochlorococcus; Prochlorococcaceae; Prochlorales; Cyanobacteria; Bacteria

General Information: This strain was collected from the north Atlantic Ocean at a depth of 30 m and was isolated by filter fractionation. This strain belongs to the 'low light-adapted' ecotype, clade I, and has a high Chl b/a2 ratio. Marine cyanobacterium. This non-motile bacterium is a free-living marine organism that is one of the most abundant, as well as the smallest, on earth, and contributes heavily to carbon cycling in the marine environment. This cyanobacterium grows in areas of nitrogen and phosphorus limitation and is unique in that it utilizes divinyl chlorophyll a/b proteins as light-harvesting systems instead of phycobiliproteins. These pigments allow harvesting of light energy from blue wavelengths at low light intensity.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18553911209926561Island text1.7384316.287710.4032NeighboursBLASTN85539.gbk
219976021972519966Island text1.5326821.727132.5395Neighbours21BLASTN199760.gbk
354100056066819669Island text1.7251516.564319.1863Neighbours21BLASTN+541000.gbk
467932070235523036Island text2.2230216.482213.7776Neighbours21BLASTN679320.gbk
578544780447619030Island text2.90217.263511.5544Neighbours21BLASTNIslandViewer 785447.gbk
6936929*95808421156Island text2.4586417.043610.2509Neighbours21BLASTN936929.gbk
71531187*156050329317Island text1.8175618.923632.4596Neighbours21BLASTN+1531187.gbk
81635838*165907523238Island text1.6988718.48827.8195Neighbours21BLASTN1635838.gbk