Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008818: Hyperthermus butylicus DSM 5456, complete genome

NCBI: NC_008818

Host Lineage: Hyperthermus butylicus; Hyperthermus; Pyrodictiaceae; Desulfurococcales; Crenarchaeota; Archaea

General Information: This organism was isolated from the sea floor of a solfataric (volcanic area that gives off gas) environment with temperatures up to 112 degrees C at a depth of 9 m, off the shore of Sao Miguel Island, Azores. Hyperthermophilic sulfur-reducing archaeon. This bacterium is an extreme hyperthermophilic, anaerobic, sulfur-reducing archaeon. Grows optimally at 95-106 degress C, with a NaCl concentration of 17 g/l and a pH of 7.0.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1357993*37808720095Island text1.6601631.055433.9116Neighbours22BLASTN+357993.gbk
2702452*72059918148Island text1.5822828.410725.3807Neighbours9702452.gbk
3956231*97712720897Island text1.5591731.795240.0181Neighbours32BLASTN956231.gbk
41127575*115074223168Island text1.5851829.222424.3087Neighbours22BLASTN1127575.gbk
51172440*119232219883Island text1.5860331.117535.4392Neighbours22BLASTNIslandViewer 1172440.gbk
61244612*128849643885Island text1.5668429.769339.4594Neighbours32BLASTN+1244612.gbk
71483483*152843644954Island text1.9430735.561540.3086Neighbours22BLASTN+1483483.gbk
81644223*166799923777Island text1.5032529.591546.9021Neighbours12BLASTN1644223.gbk