Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008817: Prochlorococcus marinus str. MIT 9515, complete genome

NCBI: NC_008817

Host Lineage: Prochlorococcus marinus; Prochlorococcus; Prochlorococcaceae; Prochlorales; Cyanobacteria; Bacteria

General Information: This strain was collected from the surface waters of the Equatorial Pacific. Marine cyanobacterium. This non-motile bacterium is a free-living marine organism that is one of the most abundant, as well as the smallest, on earth, and contributes heavily to carbon cycling in the marine environment. This cyanobacterium grows in areas of nitrogen and phosphorus limitation and is unique in that it utilizes divinyl chlorophyll a/b proteins as light-harvesting systems instead of phycobiliproteins. These pigments allow harvesting of light energy from blue wavelengths at low light intensity.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1228029*25236024332Island text1.6179721.239718.9068Neighbours21BLASTN228029.gbk
2387408*41041423007Island text1.7400220.77421.9133Neighbours21BLASTN+387408.gbk
353934956486025512Island text1.8535421.162519.152Neighbours21BLASTN+539349.gbk
470937073319223823Island text1.4491217.15126.6354Neighbours21BLASTNIslandViewer 709370.gbk
51443983*147127227290Island text1.8592319.600826.0571Neighbours21BLASTN1443983.gbk
61476473*152252446052Island text1.6104219.736219.5606Neighbours21BLASTN1476473.gbk
71538507*156219823692Island text1.3776616.269524.8142Neighbours21BLASTN1538507.gbk
81574506*159903624531Island text1.4035121.096815.2333Neighbours21BLASTN1574506.gbk