Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008816: Prochlorococcus marinus str. AS9601, complete genome

NCBI: NC_008816

Host Lineage: Prochlorococcus marinus; Prochlorococcus; Prochlorococcaceae; Prochlorales; Cyanobacteria; Bacteria

General Information: This cyanobacterium was collected in the Arabian Sea at a depth of 50 meters and isolated by filter fractionation. It belongs to Clade HL-II, the most abundant group in the North Atlantic and North Pacific Oceans, often constituting over 90% of the total population. Marine cyanobacterium. This non-motile bacterium is a free-living marine organism that is one of the most abundant, as well as the smallest, on earth, and contributes heavily to carbon cycling in the marine environment. This cyanobacterium grows in areas of nitrogen and phosphorus limitation and is unique in that it utilizes divinyl chlorophyll a/b proteins as light-harvesting systems instead of phycobiliproteins. These pigments allow harvesting of light energy from blue wavelengths at low light intensity.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1369074*39418325110Island text1.67421.720522.0652Neighbours21BLASTN+IslandViewer 369074.gbk
251889554689628002Island text1.789721.228619.5661Neighbours21BLASTN+518895.gbk
31206070122821922150Island text1.6075425.706135.944Neighbours211206070.gbk
41416711*145515438444Island text1.7656318.277824.9317Neighbours21BLASTN1416711.gbk
51476209*151184735639Island text1.8104419.002326.2425Neighbours21BLASTN1476209.gbk