Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008787: Campylobacter jejuni subsp. jejuni 81-176, complete genome

NCBI: NC_008787

Host Lineage: Campylobacter jejuni; Campylobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This strain (81-176; Penner serotype 23/36) was isolated during an outbreak of campylobacteriosis in Minnesota, USA, due to the consumption of contaminated milk. This organism is the leading cause of bacterial food poisoning (campylobacteriosis) in the world, and is more prevalent than Salmonella enteritis (salmonellosis). Found throughout nature, it can colonize the intestines of both mammals and birds, and transmission to humans occurs via contaminated food products. This organism can invade the epithelial layer by first attaching to epithelial cells, then penetrating through them. Systemic infections can also occur causing more severe illnesses.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131999*5922327225Island text2.1850418.400631.3671Neighbours21BLASTN31999.gbk
2390215*41172121507Island text1.8905318.171727.6594Neighbours21BLASTN+390215.gbk
3437786*45759919814Island text1.5359414.783627.0703Neighbours21BLASTN437786.gbk
4685401*71140226002Island text2.2755219.334432.0749Neighbours21BLASTN685401.gbk
51345988*137061924632Island text2.2747614.548912.5393Neighbours21BLASTN+1345988.gbk
61463696148938125686Island text1.4937915.503428.2008Neighbours21BLASTN+1463696.gbk
71582110*160769325584Island text1.770715.934530.5471Neighbours21BLASTN1582110.gbk