Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008786: Verminephrobacter eiseniae EF01-2, complete genome

NCBI: NC_008786

Host Lineage: Verminephrobacter eiseniae; Verminephrobacter; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This species was isolated from the kidney of the earthworm Eisenia foetida. Evidence based on curing experiments, Acidovorax-specific probes, and 16S phylogeny, indicate that earthworm egg capsules contain high numbers of the bacterial endosymbiont. Juvenile earthworms are colonized during embryonic development within the egg capsule, and failing this are not likely to acquire the symbiont by association with colonized adults or their bedding.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1186884262323936Island text1.4909429.681421.5739Neighbours11BLASTN18688.gbk
214279716109918303Island text1.6748320.707720.709Neighbours11BLASTN+IslandViewer 142797.gbk
326695929188324925Island text1.5110622.58539.6115Neighbours11BLASTN266959.gbk
4492363*51674824386Island text1.9788235.101731.5436Neighbours11BLASTNIslandViewer 492363.gbk
5557314*57994722634Island text1.630827.054122.873Neighbours11BLASTN+IslandViewer 557314.gbk
673879176054221752Island text1.69127.566420.412Neighbours11BLASTN+IslandViewer 738791.gbk
71298817*132410025284Island text1.7189724.908322.2992Neighbours11BLASTNIslandViewer 1298817.gbk
81332041135577823738Island text2.0794129.159123.5301Neighbours11BLASTN+IslandViewer 1332041.gbk
91507139153709929961Island text1.4972821.619620.0573Neighbours11BLASTN+IslandViewer 1507139.gbk
101553833157650522673Island text1.5885221.461618.7234Neighbours11BLASTN+IslandViewer 1553833.gbk
111767315179053023216Island text1.9399428.046725.9159Neighbours11BLASTN+IslandViewer 1767315.gbk
121936626*196111324488Island text1.5031422.86632.5435Neighbours11BLASTN1936626.gbk
132022683204190719225Island text1.5647425.53122.9707Neighbours11BLASTNIslandViewer 2022683.gbk
142175064220455029487Island text2.6165734.109422.3402Neighbours11BLASTN+IslandViewer 2175064.gbk
152425314244388918576Island text1.4684125.516817.3773Neighbours11BLASTNIslandViewer 2425314.gbk
162489104250852019417Island text1.5062321.203223.925Neighbours11BLASTN+IslandViewer 2489104.gbk
172573558259844924892Island text1.5187924.935127.143Neighbours11BLASTN+IslandViewer 2573558.gbk
182687688*271388926202Island text1.6446128.695925.5407Neighbours11BLASTNIslandViewer 2687688.gbk
192729635277134341709Island text1.8271124.36530.8963Neighbours11BLASTNIslandViewer 2729635.gbk
202809985283568425700Island text2.2338532.451524.1789Neighbours11BLASTN+IslandViewer 2809985.gbk
212850736287895428219Island text2.1949925.867620.9138Neighbours11BLASTN+IslandViewer 2850736.gbk
223045770307319127422Island text1.990227.920623.3634Neighbours11BLASTN+IslandViewer 3045770.gbk
233291700331510623407Island text2.0450930.550832.3979Neighbours11BLASTNIslandViewer 3291700.gbk
243323167*337505651890Island text2.6885431.359926.1841Neighbours11BLASTN+IslandViewer 3323167.gbk
253681847370092519079Island text1.4929223.601717.4564Neighbours11BLASTN+IslandViewer 3681847.gbk
263845988387218826201Island text2.2341432.082925.8379Neighbours11BLASTN+3845988.gbk
273915000394226927270Island text2.2645232.769321.5836Neighbours11BLASTN+IslandViewer 3915000.gbk
284040864406409923236Island text1.4233423.188221.8662Neighbours11BLASTN+IslandViewer 4040864.gbk
294070753409567524923Island text1.8369725.218418.7463Neighbours11IslandViewer 4070753.gbk
304102606412154718942Island text1.5381421.95427.7622Neighbours11BLASTN+IslandViewer 4102606.gbk
314216152423924523094Island text1.6485230.491224.2435Neighbours11BLASTN+IslandViewer 4216152.gbk
324579490460247122982Island text1.5047924.443536.0859Neighbours11BLASTN+IslandViewer 4579490.gbk
335128363515013521773Island text1.6941223.894221.5922Neighbours11BLASTN+IslandViewer 5128363.gbk