Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008781: Polaromonas naphthalenivorans CJ2, complete genome

NCBI: NC_008781

Host Lineage: Polaromonas naphthalenivorans; Polaromonas; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Naphthalene-degrading bacterium. Polaromonas naphthalenivorans was isolated from naphthalene-contaminated, freshwater sediment. This organism is capable of aerobic degradation of naphthalene at temperatures of less than 20 degrees C. Naphthalene is a polycyclic aromatic hydrocarbon (PAH). PAHs can be toxic and/or carcinogenic, therefore PAH contamination is of considerable concern.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1330919*34993719019Island text1.4824730.879128.9378Neighbours11BLASTN+330919.gbk
2654289*67826423976Island text2.038826.659829.342Neighbours11BLASTN+IslandViewer 654289.gbk
370881173249923689Island text1.7244328.582320.0315Neighbours11BLASTN708811.gbk
41038158106236824211Island text2.1013526.878127.3227Neighbours11BLASTN+1038158.gbk
51426285*145059324309Island text1.5666224.720344.0309Neighbours11BLASTN1426285.gbk
61507384*153416926786Island text1.5946924.514629.0025Neighbours11BLASTN+1507384.gbk
71973826199696823143Island text1.5018721.72323.2428Neighbours11BLASTN1973826.gbk
82108893212953620644Island text1.5833224.061321.5191Neighbours11BLASTN+2108893.gbk
92575213*259673521523Island text1.6461723.040333.3313Neighbours11BLASTNIslandViewer 2575213.gbk
102611702264863036929Island text1.6868128.216924.4079Neighbours11BLASTN+IslandViewer 2611702.gbk
112655071268316628096Island text1.6718326.925422.6284Neighbours11BLASTN+2655071.gbk
122883968290914025173Island text1.9751128.041923.3473Neighbours11BLASTN+2883968.gbk
132925818*294540419587Island text1.5071521.808123.0661Neighbours11BLASTN2925818.gbk
142981868*300465822791Island text1.4844826.015329.5956Neighbours11BLASTN+2981868.gbk
153056407308270026294Island text1.9517924.556629.1317Neighbours11BLASTN+IslandViewer 3056407.gbk
163302934332709924166Island text1.9634929.263737.4767Neighbours11BLASTN+3302934.gbk
173365468*340127235805Island text4.1484444.0530.5589Neighbours41BLASTN+3365468.gbk
183508784*353338924606Island text1.5034323.188244.6278Neighbours11BLASTN+3508784.gbk
193688965371374824784Island text2.2843231.651734.443Neighbours11BLASTN3688965.gbk
204178115*422557447460Island text5.3252649.070921.5632Neighbours41BLASTN+IslandViewer 4178115.gbk