Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008769: Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome

NCBI: NC_008769

Host Lineage: Mycobacterium bovis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism was used to produce the antigen which was utilized for vaccine development. Causative agent of classic bovine tuberculosis. This genus comprises a number of Gram-positive, acid-fast, rod-shaped aerobic bacteria and is the only member of the family Mycobacteriaceae within the order Actinomycetales. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. This bacterium is the causative agent of classic bovine tuberculosis, but it can also cause the disease in humans, especially if contaminated milk is consumed without prior pasteurization. The Mycobacterium bovis complex is a diverse group of species, serovars and morphotypes that cause tuberculosis-like diseases in animals and humans. Pasteurization of milk is a major preventitive factor in transmission of bovine tuberculosis to humans. However, spreading the disease through milk and dairy products is still a concern in underdeveloped countries where pasteurization is not practiced.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
150700053043423435Island text1.8097218.519628.0371Neighbours11BLASTN+507000.gbk
286067087969619027Island text1.7806617.082120.6207Neighbours11BLASTN+IslandViewer 860670.gbk
31125567*114763722071Island text1.7600518.851128.5548Neighbours11BLASTN+IslandViewer 1125567.gbk
41709078173231123234Island text1.8045120.519925.8767Neighbours11BLASTN+1709078.gbk
51876109190061624508Island text1.738319.671135.2094Neighbours11BLASTN+1876109.gbk
62754828277870723880Island text1.4766818.774321.7079Neighbours11BLASTN2754828.gbk
73070266308959919334Island text1.508720.95935.3007Neighbours11BLASTN+IslandViewer 3070266.gbk
83242453326356021108Island text1.5302217.025831.4752Neighbours11BLASTN+IslandViewer 3242453.gbk
93427254344807620823Island text1.5703417.448919.7771Neighbours11BLASTN+IslandViewer 3427254.gbk
103769065379470125637Island text1.439319.905227.6099Neighbours11BLASTN+IslandViewer 3769065.gbk