Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008752: Acidovorax avenae subsp. citrulli AAC00-1, complete genome

NCBI: NC_008752

Host Lineage: Acidovorax citrulli; Acidovorax; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism is the causal agent of bacterial fruit blotch, which was first detected in Florida in 1989. The disease is spread by infested seed, infected transplants, or natural spread from wild hosts. Infected transplants represent the most important means of disease transmission because fruit blotch can spread throughout the transplant operation and can be asymptomatic on older plants, which can lead to high numbers of infected young plants early in the planting season.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116687718811421238Island text1.8055916.647425.5074Neighbours11BLASTNIslandViewer 166877.gbk
226190328210620204Island text1.591917.431938.9621Neighbours11BLASTN261903.gbk
3415599*44209126493Island text2.6344522.50222.6313Neighbours11BLASTN+IslandViewer 415599.gbk
455882857802619199Island text2.6003217.114520.9709Neighbours11BLASTN+IslandViewer 558828.gbk
558588461104025157Island text1.9234516.239119.4603Neighbours11BLASTN+IslandViewer 585884.gbk
662080264468623885Island text2.4374419.511325.2665Neighbours11BLASTNIslandViewer 620802.gbk
772518977609450906Island text2.8359123.277619.9421Neighbours11BLASTN+IslandViewer 725189.gbk
81025980106353637557Island text3.2785329.168130.2319Neighbours11BLASTN+IslandViewer 1025980.gbk
91119323114094021618Island text1.6215316.57823.2489Neighbours11BLASTN+1119323.gbk
101523768*154381320046Island text1.5696716.672717.9772Neighbours11BLASTN+1523768.gbk
112056547207678720241Island text1.6573716.494420.9282Neighbours11BLASTN+IslandViewer 2056547.gbk
122334511*236012625616Island text2.6925423.242631.7593Neighbours11BLASTN+IslandViewer 2334511.gbk
132615360264142526066Island text3.1634422.471734.0522Neighbours11BLASTN+IslandViewer 2615360.gbk
142724977274618021204Island text2.2797218.207220.5019Neighbours11BLASTN+IslandViewer 2724977.gbk
152936933297832941397Island text1.9167318.430419.638Neighbours11BLASTN+IslandViewer 2936933.gbk
163007073303271725645Island text2.7826215.567224.0102Neighbours11BLASTNIslandViewer 3007073.gbk
173217695323954921855Island text2.0321417.033418.3354Neighbours11BLASTN+IslandViewer 3217695.gbk
183511006353392522920Island text2.4067519.225421.0426Neighbours11BLASTN+IslandViewer 3511006.gbk
193595516362337527860Island text2.7055223.568719.4522Neighbours11BLASTN+IslandViewer 3595516.gbk
203684739371824933511Island text1.7316817.87724.5362Neighbours11BLASTN+IslandViewer 3684739.gbk
213828438385232823891Island text2.0024320.823227.8497Neighbours11BLASTN3828438.gbk
223902637*393751334877Island text1.9356116.473721.2911Neighbours11BLASTNIslandViewer 3902637.gbk
233955327*397626320937Island text2.0407116.210716.1439Neighbours11BLASTN+IslandViewer 3955327.gbk
244086283*411381327531Island text3.9869433.825431.7537Neighbours11BLASTN+IslandViewer 4086283.gbk
254147715417135323639Island text2.8338521.646732.4664Neighbours11BLASTNIslandViewer 4147715.gbk
264589119461454025422Island text1.5806514.871120.1303Neighbours11BLASTN+4589119.gbk
274665699468808622388Island text1.6433918.359419.64Neighbours11BLASTNIslandViewer 4665699.gbk
284747376*477161024235Island text2.3964522.675924.2995Neighbours11BLASTNIslandViewer 4747376.gbk
295213431*523609922669Island text1.4959817.60720.6359Neighbours11BLASTN+5213431.gbk