Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008750: Shewanella sp. W3-18-1, complete genome

NCBI: NC_008750

Host Lineage: Shewanella; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Pacific Ocean marine sediments at a depth of 630 m. Assimilatory sulfate reduction.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
145023347009919867Island text1.5615435.841722.9443Neighbours41BLASTN+IslandViewer 450233.gbk
280744683071223267Island text3.0241529.769620.9952Neighbours21BLASTN+IslandViewer 807446.gbk
31253354128321029857Island text1.7039337.324436.2275Neighbours11BLASTN+IslandViewer 1253354.gbk
41659095*168328224188Island text1.5614228.100747.9778Neighbours21BLASTN+1659095.gbk
52332000235419622197Island text1.3564337.214330.8868Neighbours41BLASTN+IslandViewer 2332000.gbk
63314309333444120133Island text1.5133134.117647.2205Neighbours42+IslandViewer 3314309.gbk
73435495*345768522191Island text1.7343729.906447.3464Neighbours21BLASTN3435495.gbk