Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008740: Marinobacter aquaeolei VT8, complete genome

NCBI: NC_008740

Host Lineage: Marinobacter hydrocarbonoclasticus; Marinobacter; Alteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Marinobacter aquaeolei VT8, also known as Marinobacter hydrocarbonoclasticus VT8, is a moderately halophilic, hydrocarbon-degrading bacterium isolated from an oil well off the coast of Vietnam. Hydrocarbon-degrading marine bacterium. This organism is a moderately halophilic, hydrocarbon-degrading bacterium which has been isolated from a number of hydrocarbon polluted marine environments. Marinobacter hydrocarbonoclasticus is able to produce biofilms as well as survive in open seawater.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1220642*25033629695Island text2.0748733.57937.3129Neighbours13BLASTN+IslandViewer 220642.gbk
225743428330125868Island text1.9856637.774721.7193Neighbours11BLASTN+IslandViewer 257434.gbk
3443274*51891675643Island text1.8535333.680630.177Neighbours11BLASTN+IslandViewer 443274.gbk
463787065871720848Island text1.5018930.897436.5148Neighbours33BLASTN637870.gbk
568308170286719787Island text1.4946429.815219.5182Neighbours11BLASTN+683081.gbk
687611590015424040Island text1.7980531.583136.058Neighbours11BLASTN+IslandViewer 876115.gbk
7979830*100009920270Island text1.5502427.612336.8863Neighbours11BLASTNIslandViewer 979830.gbk
81357312*138014322832Island text1.4355331.55424.9117Neighbours11BLASTN+IslandViewer 1357312.gbk
91414926144139326468Island text2.316439.10132.3909Neighbours11BLASTN+IslandViewer 1414926.gbk
101459747148447324727Island text1.7637931.551532.3442Neighbours13BLASTN1459747.gbk
111484531*151529830768Island text2.5644738.962641.2559Neighbours14BLASTN+IslandViewer 1484531.gbk
121635137*165963224496Island text1.66233.725325.0126Neighbours33BLASTN+1635137.gbk
131815743185114935407Island text2.2725930.794652.7266Neighbours14BLASTN+IslandViewer 1815743.gbk
142563278259344030163Island text1.7428535.297330.2804Neighbours11BLASTN+IslandViewer 2563278.gbk
152905990294863442645Island text1.7489334.024738.8051Neighbours14BLASTN2905990.gbk
162989856301425624401Island text1.4575131.140632.7811Neighbours11BLASTN+IslandViewer 2989856.gbk
173259962328059920638Island text1.6938131.09831.3036Neighbours11BLASTN+IslandViewer 3259962.gbk
183520500*356433043831Island text1.605433.807622.1595Neighbours11BLASTN+IslandViewer 3520500.gbk
193602367*362072718361Island text1.498137.007525.539Neighbours11BLASTN+3602367.gbk
204109000413081821819Island text1.5753631.937932.6732Neighbours11BLASTN+IslandViewer 4109000.gbk