Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008726: Mycobacterium vanbaalenii PYR-1, complete genome

NCBI: NC_008726

Host Lineage: Mycobacterium vanbaalenii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolated from contaminated sites exposed to petrogenic chemicals in the watershed of Redfish Bay, Texas, USA in 1986. Polycyclic aromatic hydrocarbon-degrading bacterium. Mycobacterium vanbaalenii is a fast-growing soil mycobacterium which can degrade polycyclic aromatic hydrocarbons such as fluoranthene, pyrene, phenanthrene. This organism may be useful for bioremediation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
149476951509920331Island text1.6795815.415515.4349Neighbours11BLASTN+IslandViewer 494769.gbk
254910257820229101Island text1.5411217.002231.7723Neighbours11BLASTN+IslandViewer 549102.gbk
361000062882018821Island text1.6287315.312911.1889Neighbours11BLASTN+IslandViewer 610000.gbk
492589594809922205Island text1.4678818.21522.3718Neighbours11BLASTN925895.gbk
51142500117062228123Island text1.9955720.697321.7548Neighbours11BLASTN+IslandViewer 1142500.gbk
61175999119522119223Island text1.4758617.722516.5306Neighbours11BLASTN+1175999.gbk
71533727155282319097Island text1.519216.944328.3408Neighbours11BLASTN+1533727.gbk
81776192180185525664Island text2.1492720.001320.6302Neighbours11BLASTN+IslandViewer 1776192.gbk
93858209387826620058Island text1.5534614.145613.0548Neighbours11BLASTN+IslandViewer 3858209.gbk
103915979394187225894Island text1.5728216.848926.804Neighbours11BLASTNIslandViewer 3915979.gbk
113947917396709919183Island text1.5700114.02613.9867Neighbours11BLASTN+IslandViewer 3947917.gbk
123968222399875830537Island text2.2075816.268718.0335Neighbours11BLASTN+IslandViewer 3968222.gbk
134672850469509922250Island text1.6426416.331514.3562Neighbours11+IslandViewer 4672850.gbk
144725389475038925001Island text1.4818917.157113.8811Neighbours11BLASTN4725389.gbk
156335961637742441464Island text1.6134914.679317.9486Neighbours11BLASTN+IslandViewer 6335961.gbk
166393489*643542641938Island text1.601416.793617.826Neighbours11BLASTN+IslandViewer 6393489.gbk