Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008711: Arthrobacter aurescens TC1, complete genome

NCBI: NC_008711

Host Lineage: Arthrobacter aurescens; Arthrobacter; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The TC1 strain was isolated from a South Dakota, USA spill site soil that contained high concentrations (up to 29,000 microg/ml) of atrazine. Converts agricultural biomass to ethanol. Arthrobacter aurescens is found worldwide in the soil, water, and subsurface. It breaks down organic matter and is able to transform heavy metals into less toxic forms, such as the conversion of mercury salts into the neutral metal. It is also capable of utilizing t-anethole as a sole carbon source, and transforming it with high yield into valuable aromatic compounds which could potentially be used for aromas and flavorings.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1424482*44882424343Island text1.6086719.686128.9565Neighbours11BLASTNIslandViewer 424482.gbk
21224164*124601821855Island text1.8138119.659933.5362Neighbours11BLASTNIslandViewer 1224164.gbk
31892881191194919069Island text1.7593418.503833.3719Neighbours11BLASTN+IslandViewer 1892881.gbk
43454359349427739919Island text2.570624.924533.1034Neighbours11BLASTN+IslandViewer 3454359.gbk
53520515354495824444Island text1.4982419.485724.735Neighbours11BLASTNIslandViewer 3520515.gbk
63701635*372498023346Island text1.4016919.017524.4366Neighbours11BLASTN+3701635.gbk
74579997*460549925503Island text1.6928920.771228.8796Neighbours11BLASTN4579997.gbk