Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008705: Mycobacterium sp. KMS, complete genome

NCBI: NC_008705

Host Lineage: Mycobacterium; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism was isolated from creosote-contaminated soil from the Champion International Superfund site in Libby, Montana, USA. This microbe, along with some others collected at this site, are able to rapidly mineralize 14C-labeled pyrene. Phylogenetic studies based on the rRNA 16S gene confirmed that strains collected at this site were distinct from one another and also from other known Mycobacterium isolates.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127434*5721729784Island text2.4617919.709418.0965Neighbours11BLASTN+IslandViewer 27434.gbk
286862395099082368Island text1.9013120.325417.0083Neighbours11BLASTN+IslandViewer 868623.gbk
31022252*104828626035Island text1.4980216.555222.9991Neighbours11BLASTN+IslandViewer 1022252.gbk
41537080155764220563Island text1.5291113.661226.3613Neighbours11BLASTN+IslandViewer 1537080.gbk
51557711161059952889Island text1.6009517.256420.9558Neighbours11BLASTN+IslandViewer 1557711.gbk
61752180177459922420Island text2.034516.105915.8686Neighbours11BLASTN+IslandViewer 1752180.gbk
71790222183895348732Island text1.9681218.552325.1182Neighbours11BLASTN+IslandViewer 1790222.gbk
81839983186445724475Island text1.6405914.70718.0503Neighbours11BLASTN+IslandViewer 1839983.gbk
92763131279239929269Island text2.0207820.728220.3871Neighbours11BLASTN+IslandViewer 2763131.gbk
103201817*322309921283Island text1.5474314.201220.0207Neighbours11BLASTN+IslandViewer 3201817.gbk
113377697340929731601Island text1.5204114.406610.2789Neighbours11BLASTN+IslandViewer 3377697.gbk
123430839345338922551Island text1.7667317.103716.9347Neighbours11BLASTNIslandViewer 3430839.gbk
134053070407747524406Island text1.4847616.001917.0971Neighbours11BLASTN4053070.gbk
144975402499824322842Island text1.6785516.469314.2405Neighbours11BLASTNIslandViewer 4975402.gbk
155144433*517009925667Island text1.6549518.405413.978Neighbours11BLASTN+IslandViewer 5144433.gbk