Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008702: Azoarcus sp. BH72, complete genome

NCBI: NC_008702

Host Lineage: Azoarcus; Azoarcus; Rhodocyclaceae; Rhodocyclales; Proteobacteria; Bacteria

General Information: This organism is a nitrogen-fixing obligate endophyte first isolated from the roots of Kaller grass in the Punjab region of Pakistan. These organisms are never found in root-free soil and colonize root tissues without causing disease. This strain has been shown to express genes involved in nitrogen fixation in root tissue and is thought to provide significant amounts of nitrogen to its host plant.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111506115061Island text1.5383820.815631.6771Neighbours11BLASTN1.gbk
236996539538125417Island text2.5195730.251725.431Neighbours11BLASTN+369965.gbk
3815264*84609430831Island text3.4236130.527132.3852Neighbours11BLASTN+IslandViewer 815264.gbk
41094663*111848823826Island text1.6064422.576220.58Neighbours11BLASTN+1094663.gbk
51153344*117844425101Island text1.5104921.212323.5879Neighbours11BLASTN1153344.gbk
61432952*147997747026Island text1.9707122.849522.4394Neighbours11BLASTN+1432952.gbk
71514707*153954024834Island text1.6904420.819422.6152Neighbours11BLASTN+1514707.gbk
82039462*206354724086Island text1.5550222.501230.2168Neighbours11BLASTN+2039462.gbk
92230396224859918204Island text1.4704618.798620.7029Neighbours11BLASTN+IslandViewer 2230396.gbk
102259430*228338423955Island text1.6360319.322120.4095Neighbours11BLASTN+2259430.gbk
112378890*240382824939Island text1.7218520.575617.6916Neighbours11BLASTN2378890.gbk
122520500255173231233Island text2.200623.919326.9993Neighbours11BLASTN2520500.gbk
132892605291640623802Island text1.8175720.771524.0346Neighbours11BLASTN+IslandViewer 2892605.gbk
142942246*296909926854Island text3.8802628.356633.829Neighbours11BLASTN+2942246.gbk
153375027339883123805Island text2.1037923.099616.6021Neighbours11BLASTN3375027.gbk
163580380360360623227Island text1.8384321.098224.5696Neighbours11BLASTN3580380.gbk
173928043395047222430Island text1.5231820.187930.1072Neighbours11BLASTN+3928043.gbk
184064470409211327644Island text3.2259325.300921.0785Neighbours11BLASTN+IslandViewer 4064470.gbk