Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008701: Pyrobaculum islandicum DSM 4184, complete genome

NCBI: NC_008701

Host Lineage: Pyrobaculum islandicum; Pyrobaculum; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: Hyperthermophilic anaerobe. Pyrobaculum islandicum was isolated from water from a geothermal power plant in Iceland. This organism is able to grow lithotrophically and organotrophically using hydrogen or organic matter as the electron donors and sulfur, sulfite, and thiosulfate as electron acceptors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
137219*5563518417Island text1.9143534.843118.766Neighbours61BLASTN+37219.gbk
2629318060517675Island text1.7979234.934344.7679Neighbours61BLASTN+62931.gbk
316866218796919308Island text1.6389235.700419.1558Neighbours61BLASTN+168662.gbk
419585025800262153Island text1.8817736.388425.3657Neighbours61BLASTN+IslandViewer 195850.gbk
5391216*40959918384Island text1.8684835.758140.4434Neighbours61BLASTN391216.gbk
61039304105911119808Island text2.0408735.942121.8744Neighbours61BLASTN+1039304.gbk
71226797124688020084Island text1.909335.843320.6196Neighbours61BLASTN1226797.gbk
81259000*128222723228Island text1.8761536.240426.1407Neighbours61BLASTN+IslandViewer 1259000.gbk
91310857135553844682Island text1.8825736.167829.7006Neighbours61BLASTN+IslandViewer 1310857.gbk
101363665139516131497Island text2.3907538.75645.2358Neighbours61BLASTN+1363665.gbk
111412500*143164919150Island text1.6977538.178752.0059BLASTN1412500.gbk
121582839*160110218264Island text2.0683835.326537.6112Neighbours61BLASTN1582839.gbk
131607419*162679419376Island text1.6929235.203915.2637Neighbours61BLASTN1607419.gbk
141719464*176658247119Island text2.2509339.675220.5236Neighbours61BLASTN+1719464.gbk
151785905180759021686Island text1.6820434.034511.6214Neighbours61BLASTN+IslandViewer 1785905.gbk