Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008699: Nocardioides sp. JS614, complete genome

NCBI: NC_008699

Host Lineage: Nocardioides; Nocardioides; Nocardioidaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This bacterium grows quickly and efficiently on media containing vinyl chloride and ethene. If starved of vinyl chloride for one day, it will not recover for more than 40 days. This strain was placed in the Nocardioides genus on the basis of 16S rRNA analysis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1565008084424345Island text1.6871414.22312.6581Neighbours11BLASTN+IslandViewer 56500.gbk
2590000*61720127202Island text1.5796213.732413.6527Neighbours11BLASTN+IslandViewer 590000.gbk
3833737*85664022904Island text1.5945814.299810.919Neighbours11BLASTN+833737.gbk
485783787806320227Island text1.7313612.694613.5278Neighbours11BLASTN857837.gbk
51067855*111667748823Island text2.2742619.343815.574Neighbours11BLASTN+IslandViewer 1067855.gbk
61132790117213739348Island text2.211617.81414.3607Neighbours11BLASTN+IslandViewer 1132790.gbk
71247423*126898521563Island text1.5811414.429913.4556Neighbours11BLASTN+1247423.gbk
81673181172409950919Island text1.8589515.451816.826Neighbours11BLASTN+IslandViewer 1673181.gbk
91816392183896922578Island text2.0834316.619312.1422Neighbours11BLASTN+1816392.gbk
102260606228821627611Island text1.6326213.549812.5868Neighbours11BLASTN+2260606.gbk
112294361234337849018Island text2.1181715.376414.5477Neighbours11BLASTN+2294361.gbk
122418722244739628675Island text1.8312415.333719.1579Neighbours11BLASTN+2418722.gbk
132916752293906622315Island text1.9948415.966210.9009Neighbours11BLASTN+2916752.gbk
143516608*354240325796Island text1.5178316.366716.2809Neighbours11BLASTN+3516608.gbk
153775561380004924489Island text2.4191716.517315.1084Neighbours11BLASTN+3775561.gbk
163896816391867621861Island text1.9695914.931913.9704Neighbours11BLASTN+3896816.gbk
174443000*447766734668Island text3.5236722.938521.3252Neighbours11BLASTN4443000.gbk
184922465*494869426230Island text2.0126814.088412.8548Neighbours11BLASTN+4922465.gbk