Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008698: Thermofilum pendens Hrk 5, complete genome

NCBI: NC_008698

Host Lineage: Thermofilum pendens; Thermofilum; Thermofilaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: Hyperthermophilic crenarchaeota. Thermofilum pendens is a hetrotrophic hyperthermophile that has been isolated from hot springs, mud holes, and other thermal environments. This organism gets energy from the respiration of sulfur, using complex organic compounds as electron donors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1197294*22085523562Island text1.7420328.746343.3728Neighbours13BLASTN197294.gbk
2235688*26759931912Island text2.0399127.83146.2331Neighbours13BLASTN+235688.gbk
3310069*34538235314Island text1.5408930.064432.1933Neighbours13BLASTN+310069.gbk
4435885*45955323669Island text1.618628.696829.2149Neighbours13BLASTN435885.gbk
5471564*49097419411Island text1.53728.676240.3521Neighbours13BLASTN471564.gbk
6560529*61909158563Island text1.6095529.247830.5515Neighbours13BLASTN560529.gbk
7903759*93859934841Island text1.7119430.392639.2725Neighbours13BLASTN+903759.gbk
81556223158461928397Island text2.5671437.436231.3071Neighbours13+1556223.gbk
91612873166259949727Island text2.0425334.186143.4411Neighbours13+1612873.gbk