Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008697: Nocardioides sp. JS614 plasmid pNOCA01, complete sequence

NCBI: NC_008697

Host Lineage: Nocardioides; Nocardioides; Nocardioidaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This bacterium grows quickly and efficiently on media containing vinyl chloride and ethene. If starved of vinyl chloride for one day, it will not recover for more than 40 days. This strain was placed in the Nocardioides genus on the basis of 16S rRNA analysis.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1554068532429919Island text1.4763816.719420.5993Neighbours11BLASTN+55406.gbk
211885915459935741Island text1.6721217.580218.0544Neighbours11BLASTN118859.gbk
320200022487622877Island text1.3815416.4649.65404Neighbours11BLASTN+202000.gbk