Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008687: Paracoccus denitrificans PD1222 chromosome 2, complete sequence

NCBI: NC_008687

Host Lineage: Paracoccus denitrificans; Paracoccus; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This organism is commonly found in soil and sewage sludge. This organism is able to survive in both aerobic and anaerobic environments due to its ability to use both oxygen and nitrogenous oxides making it a popular model organism for the study of electron transfer and and energy conservation.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1459676819922233Island text1.5164218.014323.2489Neighbours11BLASTN+45967.gbk
2133728*16046226735Island text3.1796328.113224.6281Neighbours11BLASTN+IslandViewer 133728.gbk
322994125509925159Island text1.6818321.913536.6602Neighbours11BLASTN+229941.gbk
425669228607929388Island text2.0519925.970620.7455Neighbours11BLASTN+IslandViewer 256692.gbk
530245032509922650Island text1.7207821.529624.3391Neighbours11BLASTN+IslandViewer 302450.gbk
638826241359925338Island text1.6042820.699317.2452Neighbours11BLASTN+388262.gbk
796515299188826737Island text1.8662123.797617.4395Neighbours11BLASTN+IslandViewer 965152.gbk