Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008686: Paracoccus denitrificans PD1222 chromosome 1, complete sequence

NCBI: NC_008686

Host Lineage: Paracoccus denitrificans; Paracoccus; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This organism is commonly found in soil and sewage sludge. This organism is able to survive in both aerobic and anaerobic environments due to its ability to use both oxygen and nitrogenous oxides making it a popular model organism for the study of electron transfer and and energy conservation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
150750*7732426575Island text3.0711225.587230.8467Neighbours11BLASTN+IslandViewer 50750.gbk
29532612062225297Island text1.9661923.251621.2445Neighbours11BLASTN+IslandViewer 95326.gbk
3405159*44047735319Island text2.1027423.069516.5542Neighbours11BLASTN+IslandViewer 405159.gbk
41180388*120659926212Island text2.3424926.138422.5987Neighbours11BLASTN+IslandViewer 1180388.gbk
51383891143076746877Island text2.1106921.845829.0821Neighbours11BLASTN+IslandViewer 1383891.gbk
61439328146928729960Island text1.7882719.728324.6999Neighbours11BLASTN+IslandViewer 1439328.gbk
71472899150063527737Island text1.6866424.042621.4691Neighbours11BLASTNIslandViewer 1472899.gbk
81592073*161599123919Island text2.3879432.626620.6846Neighbours11BLASTN+IslandViewer 1592073.gbk
91960034*199164331610Island text2.7086826.05923.7862Neighbours11BLASTN+IslandViewer 1960034.gbk
102080770*210441423645Island text1.5564422.394117.6734Neighbours11BLASTN+IslandViewer 2080770.gbk
112417000*243519018191Island text1.5400621.431218.9609Neighbours11BLASTN+IslandViewer 2417000.gbk