Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008639: Chlorobium phaeobacteroides DSM 266, complete genome

NCBI: NC_008639

Host Lineage: Chlorobium phaeobacteroides; Chlorobium; Chlorobiaceae; Chlorobiales; Chlorobi; Bacteria

General Information: Chlorobium phaeobacteroides strain DSM 266 was isolated from a lake in Norway. This species contains several carotenoids, predominated by isorenieratene and beta-isorenieratene. These are necessary for light harvesting and photoprotection, which are important functions in photosynthesis. This species demonstrates a novel type of carotenoid-mediated photoadaptation induced by the change of theta-end and beta-end carotenoid groups, under various light intensities.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
137818140262724447Island text2.753936.262317.1768Neighbours23BLASTN+378181.gbk
21462000149253030531Island text1.7290333.560626.5534Neighbours23BLASTN1462000.gbk
31573971159906525095Island text2.5952939.617731.2619Neighbours315BLASTN+1573971.gbk
42358592240388645295Island text1.9383538.517125.7776Neighbours23BLASTN+2358592.gbk
52460033248361823586Island text2.3661336.284620.0761Neighbours23BLASTN+IslandViewer 2460033.gbk
62545107258813543029Island text2.2872737.069732.1842Neighbours21BLASTN+IslandViewer 2545107.gbk
72702662272609923438Island text1.7529534.244734.1542Neighbours37BLASTN+IslandViewer 2702662.gbk
82786447*282649740051Island text1.5269734.146849.2404Neighbours23BLASTN2786447.gbk
92968000*302586557866Island text2.4939238.221436.8966Neighbours23BLASTN+IslandViewer 2968000.gbk