Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008618: Bifidobacterium adolescentis ATCC 15703, complete genome

NCBI: NC_008618

Host Lineage: Bifidobacterium adolescentis; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Human gut bacterium. This species is a normal inhabitant of the healthy human gut. Newborns, especially those that are breast-fed, are colonized with Bifidobacteria within days after birth. This species was first isolated from the feces of a breast-fed infant. In one comprehensive 16S rDNA sequence-based enumeration of the colonic microbiota of three healthy adult humans it represents, on average, 0.008% of all 16S rDNA sequences and 4.302% of the sequences in its division (Eckburg et. They are saccharolytic organisms that produce acetic and lactic acids without generation of CO2, except during degradation of gluconate.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110915*3564524731Island text2.4969536.315739.4732Neighbours11BLASTN+IslandViewer 10915.gbk
220001722396823952Island text2.2454933.105442.2341Neighbours11BLASTN+IslandViewer 200017.gbk
31095000111462019621Island text1.6588429.058926.5273Neighbours11BLASTN+IslandViewer 1095000.gbk
41206157*123086924713Island text2.2044432.939134.7978Neighbours11BLASTN+IslandViewer 1206157.gbk
51456000*148109925100Island text2.4287540.57141.3015Neighbours116BLASTN+IslandViewer 1456000.gbk
61487000150680019801Island text1.5743326.991230.047Neighbours11BLASTN+1487000.gbk
71526392155516428773Island text2.019735.781831.3229NeighboursBLASTNIslandViewer 1526392.gbk
81704462172309918638Island text1.5231727.591631.7895Neighbours11BLASTN+IslandViewer 1704462.gbk
91729739176070830970Island text3.5061740.559841.4759Neighbours11BLASTN+IslandViewer 1729739.gbk
101804610*183073726128Island text2.2197734.168349.8181Neighbours11BLASTN+IslandViewer 1804610.gbk