Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008610: Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),

NCBI: NC_008610

Host Lineage: Ruthia magnifica; Ruthia; ; sulfur-oxidizing symbionts; Proteobacteria; Bacteria

General Information: Candidatus Ruthia magnifica is a chemoautotrophic bacteria that lives symbiotically in the gut of a giant clam. This organism is an endosymbiont of the hydrothermal vent clam Calyptogena magnifica.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
125348327495321471Island text1.5013417.801634.8764Neighbours21BLASTNIslandViewer 253483.gbk
294498596460219618Island text2.0979617.611622.0672Neighbours21BLASTNIslandViewer 944985.gbk
31068429*109671628288Island text2.3204623.063233.7195Neighbours21BLASTN1068429.gbk