Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008599: Campylobacter fetus subsp. fetus 82-40, complete genome

NCBI: NC_008599

Host Lineage: Campylobacter fetus; Campylobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This strain (82-40) was isolated from the blood of a human patient who was having a renal transplant and is the best characterized isolate of this species.. The ratio of bloodstream infection to diarrheal illnesses for C. fetus is nearly 400-fold higher than for C. jejuni, indicating its marked propensity for invasive disease compared to C. jejuni. Causes infertility, infectious abortions in cattle, opportunistic human pathogen. This organism causes infertlity and infectious abortions in domesticated sheep, goats and cattle. It is an opportunistic pathogen in humans which can severely affect immunocompromised patients. Initially the bacterium can cause gastroenteritis, and then spread systemically throughout the blood (bacteremia) and cause septicemia, meningitis, and other systemic infections. This layer is essential for host colonization, and prevents complemented-mediated immune responses by inhibiting complement C3b binding.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
129000*5467125672Island text1.6634517.538429.3184Neighbours21BLASTN29000.gbk
2128431*15331724887Island text1.7000216.69224.6559Neighbours21BLASTN128431.gbk
342607844625020173Island text1.5373417.011223.5047Neighbours21+426078.gbk
4596849*61729720449Island text1.5243718.242322.0307Neighbours21BLASTN596849.gbk
590353092691623387Island text1.5371316.810630.832Neighbours21BLASTN+903530.gbk
61291300*131526123962Island text1.7896417.254329.4377Neighbours21BLASTN1291300.gbk
71325155*134694521791Island text1.5146917.777231.4563Neighbours21BLASTN1325155.gbk
81489868*151209922232Island text1.6169315.992423.5891Neighbours21BLASTN+1489868.gbk